User contributions
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- 17:56, 9 August 2011 (diff | hist) . . (0) . . N File:Equation26.GIF
- 17:43, 9 August 2011 (diff | hist) . . (+116) . . N 8 (Created page with "T. Svedberg 'The Ultracentrifuge', T. Svedberg and K.O. Pederson, eds., Johnson Reprint Corporation, New York, 1940.")
- 17:42, 9 August 2011 (diff | hist) . . (+162) . . N 48 (Created page with "J.F. Johnson, J.R. Martin and R.S. Porter, 'Physical methods of Chemistry', A. Weissberger and B.W. Rossiter, eds., Vol. 1, Part VI, Wiley, New York, 1977, p. 63.")
- 17:40, 9 August 2011 (diff | hist) . . (+160) . . N 47 (Created page with "J.T. Yang, 'Recent Advances in Protein Chemistry Volume 16', C.B. Anfinsen, M.L. Anson, K. Bailey, and J.T. Edsall, eds., Academic Press, New York, 1961, p.323.")
- 17:39, 9 August 2011 (diff | hist) . . (+89) . . Nm 17 (Created page with "H. Fujita, 'Foundations of Ultracentrigugal Analysis', J. Wiley and Sons, New York, 1975.")
- 17:38, 9 August 2011 (diff | hist) . . (+24) . . Calulating Viscosity
- 17:37, 9 August 2011 (diff | hist) . . (-54) . . Calulating Viscosity
- 17:37, 9 August 2011 (diff | hist) . . (+2,114) . . N Calulating Viscosity (Created page with "Viscosity is a measure of the energy dissipated in a fluid in order to maintain flow. In sedimentation, the flow of interest is the movement of the protein through the solvent. F...")
- 17:35, 9 August 2011 (diff | hist) . . (0) . . N File:Equation16.GIF
- 17:35, 9 August 2011 (diff | hist) . . (0) . . N File:Equation17.GIF
- 17:35, 9 August 2011 (diff | hist) . . (0) . . N File:Equation18.GIF
- 17:25, 9 August 2011 (diff | hist) . . (+62) . . N 45 (Created page with "F. Steckel and S. Szapiro, Trans. Faraday Soc., 1963, 59, 331.")
- 17:24, 9 August 2011 (diff | hist) . . (+127) . . N 44 (Created page with "R.C. Weast (editor), 'CRC Handbook of Chemistry and Physics, 67th Edition', CRC Press, Inc., Boca Raton, Florida, 1968, p. F-5.")
- 17:23, 9 August 2011 (diff | hist) . . (+165) . . N 46 (Created page with "M.L. Johnson and S.G. Frazsier, 'Methods in Enzymology Volume 117', C.H.W. Hirs and S.N. Timasheff, eds., Academic Press, Orlando, Florida, 1985, Chapter 16, p. 301.")
- 17:21, 9 August 2011 (diff | hist) . . (+41) . . Calculating Density
- 17:19, 9 August 2011 (diff | hist) . . (+4,416) . . N Calculating Density (Created page with "The first step Sednterp uses to calculate the density of a buffer is to calculate the density of the buffer at 20 degrees C. Then, the density is corrected for temperature assum...")
- 17:16, 9 August 2011 (diff | hist) . . (+3,964) . . N Buffer (Created page with "The purpose of the Buffer Components form is to allow the user to enter components of a buffer and then to have Sednterp interpolate a buffer density and/or viscosity for the buf...")
- 17:15, 9 August 2011 (diff | hist) . . (+4,791) . . N Sample (Created page with "The sample composition form allows the user to enter the composition of a protein and also allows access to computed values from the composition. The amino acid composition is li...")
- 17:13, 9 August 2011 (diff | hist) . . (+175) . . N 35 (Created page with "J.H.C. Steele, C. Tanford and J.A. Reynolds, 'Methods in Enzymology Volume 48', C.H.W. Hirs and S.N. Timasheff, eds., Academic Press, Orlando, Florida, 1978, Chapter 2, p. 18.")
- 17:12, 9 August 2011 (diff | hist) . . (+205) . . Nm 59 (Created page with "T.M. Laue, B.D. Shah, T.M. Ridgeway and S.L. Pelletier, Analyticall Ultracentrifugation in Biochemistry and Polymer Science, Royal Society of Chemistry (Edited by S. Harding and ...")
- 17:10, 9 August 2011 (diff | hist) . . (+73) . . Calculating vbar Estimates
- 17:08, 9 August 2011 (diff | hist) . . (+3,092) . . N Calculating vbar Estimates (Created page with "he partial specific volume is a measure of the change in the volume (in ml) of the solution per gram of solute. For typical proteins, any errors in are magnified 3-fold in the ...")
- 17:06, 9 August 2011 (diff | hist) . . (+1) . . List of Interpolations Available
- 17:06, 9 August 2011 (diff | hist) . . (+677) . . N List of Interpolations Available (Created page with "Sednterp will interpolate values for the following properties. {| !Property !Input !Theory !Form |- |Vbar |Amino Acids and conjugates, temp. |Calculating vbar Estimates |[[S...")
- 14:57, 9 August 2011 (diff | hist) . . (+422) . . N Interpolation (Created page with "In the program Sednterp, interpolation refers to the estimation of physical parameters from standard tables and user entered information. In most cases, Sednterp uses a power se...")
- 14:57, 9 August 2011 (diff | hist) . . (+1,126) . . List of Results
- 14:49, 9 August 2011 (diff | hist) . . (+553) . . N List of Results (Created page with "Results are molecular parameters computed by Sednterp from the equations described in the theory section. To understand the results, the theory section ought to be read at lengt...")
- 14:47, 9 August 2011 (diff | hist) . . (+589) . . N Sigma (Created page with "In equilibrium sedimentation experiments, the reduced apparent molecular weight. This is the term which is directly measured by experiment; often it is fit by nonlinear least sq...")
- 14:47, 9 August 2011 (diff | hist) . . (+212) . . N Interpretation (Created page with "In the program Sednterp, interpretation refers to the computation of molecular structural properties from (σ) sigma, s and the experimental conditions. See also: [[Li...")
- 14:45, 9 August 2011 (diff | hist) . . (-1) . . m Theory of Computer Aided Interpretation of Sedimentation Data
- 14:45, 9 August 2011 (diff | hist) . . (+2,046) . . N Theory of Computer Aided Interpretation of Sedimentation Data (Created page with "The theory described here focuses on the interpretation of sedimentation data for purified proteins, glycoproteins or lipoproteins exhibiting relatively simple behavior in aq...")
- 14:00, 9 August 2011 (diff | hist) . . (+1,750) . . N Interpolate a viscosity (Created page with "To interpolate a density or viscosity press the compute button on either the buffer density or buffer viscosity frames. The buffer components form will appear. The same form wi...")
- 14:00, 9 August 2011 (diff | hist) . . (+968) . . N Calculating Estimates of Hydration and Asymmetry (Created page with "Comparing the minimal frictional coefficient with results from a Sedimentation Velocity experiment will yield estimates of maximum hydration and maximum asymmetry. Please not...")
- 13:59, 9 August 2011 (diff | hist) . . (+45) . . N 33 (Created page with "D.C. Teller, Nature (London), 1976, 260, 729.")
- 13:58, 9 August 2011 (diff | hist) . . (+156) . . N 28 (Created page with "T.F. Kumosinski and H. Pessen, 'Methods in Enzymology Volume 117', C.H.W. Hirs and S.N. Timasheff, eds., Academic Press, New York, 1985, Chapter 11, p. 154.")
- 13:57, 9 August 2011 (diff | hist) . . (+1,710) . . N Minimal frictional coefficient (Created page with "The equivalent radius is the radius of an anhydrous sphere of equivalent volume to a given protein. Given Mr and vbar, a vbar-dependent equivalent radius can be computed. An emp...")
- 13:54, 9 August 2011 (diff | hist) . . (+972) . . N Calculating the Equivalent Radius (Created page with "Comparing the minimal frictional coefficient with results from a Sedimentation Velocity experiment will yield estimates of maximum hydration and maximum asymmetry. Please no...")
- 13:52, 9 August 2011 (diff | hist) . . (+307) . . N Enter a molecular weight (Created page with "For those cases when the molecular weight of a sample is known, Sednterp allows the user to enter a molecular weight directly. Click on the Exact M button (alt-m shortcut keystr...")
- 13:52, 9 August 2011 (diff | hist) . . (+1,750) . . N An interpolated ρ (Created page with "To interpolate a density or viscosity press the compute button on either the buffer density or buffer viscosity frames. The buffer components form will appear. The same form wi...")
- 13:52, 9 August 2011 (diff | hist) . . (0) . . Data from a sedimentation equilibrium experiment
- 13:51, 9 August 2011 (diff | hist) . . (+1,254) . . N An interpolated (Created page with "Sednterp will interpolate the partial specific volume of proteins from the composition of the protein and its ligands. Optionally, Sednterp will also compute the molecular weigh...")
- 13:42, 9 August 2011 (diff | hist) . . (+91) . . N 26 (Created page with "M.L. Johnson, J.C. Correia, D.A. Yphantis and H.R. Halvorson Biophysical J., 1981, 36, 575.")
- 13:41, 9 August 2011 (diff | hist) . . (+84) . . N 2 (Created page with "J.W. Williams, K.E. Van Holde, R.L. Baldwin, and H. Fujita, Chem. Rev., 1958,58,715.")
- 13:40, 9 August 2011 (diff | hist) . . (+1,869) . . Table of symbols
- 21:01, 8 August 2011 (diff | hist) . . (+349) . . Table of symbols
- 20:57, 8 August 2011 (diff | hist) . . (+3) . . Table of symbols
- 20:56, 8 August 2011 (diff | hist) . . (+30) . . Table of symbols
- 20:56, 8 August 2011 (diff | hist) . . (-1) . . Table of symbols
- 20:55, 8 August 2011 (diff | hist) . . (+75) . . N Table of symbols (Created page with "{| |+!List of Symbols Used|- ! align="left"|Symbol ! Description ! Units |}")
- 20:49, 8 August 2011 (diff | hist) . . (+59) . . N 25 (Created page with "D.A Yphantis and D.F. Waugh, J. Phys. Chem., 1956, 60, 623.")
- 20:48, 8 August 2011 (diff | hist) . . (+40) . . N 14 (Created page with "D. Yphantis, Biochemistry, 1964, 3, 297.")
- 20:47, 8 August 2011 (diff | hist) . . (+1,483) . . N Equation 2 (Created page with "'''Overview of Information needed:''' Regardless of whether velocity or equilibrium experiments are conducted, the values obtained by direct analysis of the data must be adjuste...")
- 20:46, 8 August 2011 (diff | hist) . . (+182) . . N 24 (Created page with "J.R. Cann, 'Interacting Macromolecules: The Theory and Practice of Their Electrophoresis, Ultracentrifugation and Chromatography', Academic press, New York, 1970, Chapter III, p....")
- 20:45, 8 August 2011 (diff | hist) . . (+127) . . N 23 (Created page with "C.R. Cantor and P.R. Schimmel, 'Biophysical Chemistry, Part II', W.H. Freeman and Co., San Francisco, 1980, Chapter 11, p. 631.")
- 20:44, 8 August 2011 (diff | hist) . . (+127) . . N 22 (Created page with "C.R. Cantor and P.R. Schimmel, 'Biophysical Chemistry, Part II', W.H. Freeman and Co., San Francisco, 1980, Chapter 11, p. 591.")
- 20:43, 8 August 2011 (diff | hist) . . (+68) . . N 21 (Created page with "J.M. Creeth and C.G. Knight, Biochem. Biophys. Acta, 1965, 102, 549.")
- 20:43, 8 August 2011 (diff | hist) . . (+66) . . N 20 (Created page with "J.P. Johnston and A.G. Ogston, Trans. Faraday Soc., 1946, 42, 789.")
- 20:42, 8 August 2011 (diff | hist) . . (+142) . . N 11 (Created page with "C.H. Chervenka, 'A Manual of Methods for the Analytical Ultracentrifuge', Spinco Division of Beckman Instruments, 1970, Palo Alto, California.")
- 20:41, 8 August 2011 (diff | hist) . . (+85) . . N 10 (Created page with "H.K. Schachman, 'Ultracentrifugation in Biochemisty', Academic Press, New York, 1959.")
- 20:40, 8 August 2011 (diff | hist) . . (+127) . . N 18 (Created page with "C.R. Cantor and P.R. Schimmel, 'Biophysical Chemistry, Part II', W.H. Freeman and Co., San Francisco, 1980, Chapter 10, p. 539.")
- 20:39, 8 August 2011 (diff | hist) . . (+12) . . Equation 1
- 20:38, 8 August 2011 (diff | hist) . . (+46) . . Equation 1
- 20:38, 8 August 2011 (diff | hist) . . (0) . . N File:Equation1.GIF
- 20:36, 8 August 2011 (diff | hist) . . (+1,425) . . N Equation 1 (Created page with "'''Overview of Information needed:''' Regardless of whether velocity or equilibrium experiments are conducted, the values obtained by direct analysis of the data must be adjuste...")
- 20:33, 8 August 2011 (diff | hist) . . (+39) . . Equation 4
- 20:31, 8 August 2011 (diff | hist) . . (+754) . . N Equation 4 (Created page with "The reduced apparent molecular weight, σ, is directly available from sedimentation equilibrium: Equating equation 1 and equation 2, one obtains the fundamental equation ...")
- 20:30, 8 August 2011 (diff | hist) . . (+25) . . Data from a sedimentation equilibrium experiment
- 20:30, 8 August 2011 (diff | hist) . . (0) . . N File:Equation4-a.GIF
- 20:22, 8 August 2011 (diff | hist) . . (+45) . . Data from a sedimentation equilibrium experiment
- 20:17, 8 August 2011 (diff | hist) . . (+4) . . Data from a sedimentation equilibrium experiment
- 20:17, 8 August 2011 (diff | hist) . . (+1,870) . . N Data from a sedimentation equilibrium experiment (Created page with "Often it is useful to interpret the results of a sedimentation equilibrium experiment as a molecular weight. Nonlinear least squares fitting will return the exponent , which is ...")
- 20:10, 8 August 2011 (diff | hist) . . (+341) . . N LG (Created page with "Α α Alpha Β β Beta Γ γ Gamma Δ δ Delta Ε ε Epsilon Ζ ζ Zeta Η η Eta Θ θ Theta Ι ι Iota Κ κ Kappa Λ λ Lambda Μ ...")
- 20:06, 8 August 2011 (diff | hist) . . (+1) . . Mr is computed
- 20:06, 8 August 2011 (diff | hist) . . (+234) . . N Mr is computed (Created page with "Sednterp can compute the molecular weight from: the composition of a protein. data from a sedimentation equilibrium experiment. or Sednterp will let you [[enter a mo...")
- 20:04, 8 August 2011 (diff | hist) . . (+1,686) . . N Equivalent Radius (Created page with "The equivalent radius is the radius of an anhydrous sphere of equivalent volume to a given protein. Given Mr and , a -dependent equivalent radius can be computed. An empirical p...")
- 20:02, 8 August 2011 (diff | hist) . . (+2) . . Buffer Physical Constants
- 20:02, 8 August 2011 (diff | hist) . . (+1,750) . . N Buffer Physical Constants (Created page with "To interpolate a density or viscosity press the compute button on either the buffer density or buffer viscosity frames. The buffer components form will appear. The same form wi...")
- 20:02, 8 August 2011 (diff | hist) . . (+1,246) . . N A Partial Specific Volume (Created page with "Sednterp will interpolate the partial specific volume of proteins from the composition of the protein and its ligands. Optionally, Sednterp will also compute the molecular weigh...")
- 15:24, 28 July 2011 (diff | hist) . . (+97) . . N 41 (Created page with "R.A. Gibbons, R.A. 'Glycoproteins, Part A', A. Gottschalk, ed., Elsevier, Amsterdam, 1972, p. 31.")
- 15:23, 28 July 2011 (diff | hist) . . (+47) . . N 40 (Created page with "S.J. Perkins, Eur. J. Biochem., 1986, 157, 169.")
- 15:22, 28 July 2011 (diff | hist) . . (+139) . . N 6 (Created page with "H. Durchschlag, 'Thermodynamic Data for Biochemisty and Biotechnology', H.-J. Hinz, ed., Springer-Verlag, New York, 1986, Chapter 3, p. 45.")
- 15:20, 28 July 2011 (diff | hist) . . (+139) . . N 9 (Created page with "9. H.K. Schachman, 'Methods in Enzymology Volume IV', S.P. Colowick and N.O. Kaplan, eds., Academic Press, New York, 1957, Chapter 2, p.32.")
- 15:19, 28 July 2011 (diff | hist) . . (+3,139) . . N Corrected for temperature (Created page with "The partial specific volume is a measure of the change in the volume (in ml) of the solution per gram of solute. For typical proteins, any errors in are magnified 3-fold in the...")
- 15:18, 28 July 2011 (diff | hist) . . (0) . . N File:Equation7.GIF
- 15:18, 28 July 2011 (diff | hist) . . (0) . . N File:Equation8.GIF
- 15:13, 28 July 2011 (diff | hist) . . (+31) . . Coefficient
- 15:12, 28 July 2011 (diff | hist) . . (+1) . . Coefficient
- 15:12, 28 July 2011 (diff | hist) . . (+54) . . N Coefficient (Created page with "File:Part1.GIFFile:Part2.GIFFile:Part3.GIF")
- 15:11, 28 July 2011 (diff | hist) . . (0) . . N File:Part2.GIF
- 15:11, 28 July 2011 (diff | hist) . . (0) . . N File:Part 3.GIF
- 15:06, 28 July 2011 (diff | hist) . . (+24) . . File menu
- 15:06, 28 July 2011 (diff | hist) . . (+4,884) . . N File menu (Created page with "The file menu on the main form contains the following options. 1. '''New data entry form'''. This choice re-initializes the main form. Choose this option to start over on a ...")
- 15:04, 28 July 2011 (diff | hist) . . (+1,661) . . N Saving Data in Databases form (Created page with "In this form, example, sample, buffer, or results information is saved as separate records in tables in a database file. This form not only saves information, but also serves as...")
- 15:04, 28 July 2011 (diff | hist) . . (+4,891) . . N File Menu (Created page with "The file menu on the main form contains the following options. 1. '''New data entry form'''. This choice re-initializes the main form. Choose this option to start over on a ...")
- 15:02, 28 July 2011 (diff | hist) . . (+1,661) . . N The Saving Data in Database Form (Created page with "In this form, example, sample, buffer, or results information is saved as separate records in tables in a database file. This form not only saves information, but also serves as...")
- 15:02, 28 July 2011 (diff | hist) . . (+4,791) . . N Sample Composition Form (Created page with "The sample composition form allows the user to enter the composition of a protein and also allows access to computed values from the composition. The amino acid composition is li...")
- 14:59, 28 July 2011 (diff | hist) . . (0) . . N File:Equation 11.GIF
- 14:59, 28 July 2011 (diff | hist) . . (0) . . N File:Equation 12.GIF
- 14:59, 28 July 2011 (diff | hist) . . (-4,619) . . Theory section
- 14:57, 28 July 2011 (diff | hist) . . (0) . . N File:Equation 13.GIF
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